3.6

RStudio image

Enterprise Applicable to Enterprise Edition
Community Applicable to Community Edition

We could use repo2docker to build a Jupyter Notebook with RStudio: https://github.com/binder-examples/r

  1. Ensure repo2docker installed
  2. Clone the source code and add sudo to apt.txt
  3. Build image with arguments --user-name jovyan --user-id 1000
  4. Add image to PrimeHub and start in Safe Mode

Check repo2docker

Execute jupyter-repo2docker command to see if any output from the command

$ jupyter-repo2docker --help | head -10
usage: jupyter-repo2docker [-h] [--config CONFIG] [--json-logs]
                           [--image-name IMAGE_NAME] [--ref REF] [--debug]
                           [--no-build]
                           [--build-memory-limit BUILD_MEMORY_LIMIT]
                           [--no-run] [--publish PORTS] [--publish-all]
                           [--no-clean] [--push] [--volume VOLUMES]
                           [--user-id USER_ID] [--user-name USER_NAME]
                           [--env ENVIRONMENT] [--editable]
                           [--target-repo-dir TARGET_REPO_DIR]
                           [--appendix APPENDIX] [--subdir SUBDIR] [--version]

If command not found, please install it by pip install jupyter-repo2docker

command not found: jupyter-repo2docker

Update configuration

Clone the source code

git clone https://github.com/binder-examples/r.git

In the source, create apt.txt and add sudo in a line

$ git status
On branch master
Your branch is up to date with 'origin/master'.

Untracked files:
  (use "git add <file>..." to include in what will be committed)

    apt.txt

nothing added to commit but untracked files present (use "git add" to track)

Verify

$ cat apt.txt
sudo

Build image

Build a image with the tag infuseai/r in the source directory (.)

jupyter-repo2docker --no-run --no-clean --user-name jovyan --user-id 1000 --push --image infuseai/r .

Add Image to PrimeHub

After the image taggedinfuseai/r is pushed, add it to the PrimeHub and start Notebook with the image in Safe Mode. Initially, it enters a general Jupyter Notebook.

For the RStudio environment, we must add the following at the end of the URL: ?urlpath=rstudio according to the README.

Regarding accessing RStudio, the current URL looks like

https://example.primehub.io/user/<username>/lab

Replace the suffix lab with rstudio to be like URL below and navigate.

https://example.primehub.io/user/<username>/rstudio

Here the RStudio is

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